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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgcctacaacttacattttatcctttgatatgttaatatctacaaaactttgatatagcttttcatgcctataaaactgctaatgcaaactctttttttgccttcagTTATCATGCCCCCTTCAGCCCTGCGTCGGCTTG

Basic information

species Glycine max
transcript GLYMA11G14660.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601529|gb|DB956765.1|DB956765
EST:     TCAAATCTGGAAAATGGTGGTAAAA                         TTATCATGCCCCCTTCAGCCCTGCGTCGGCTTG
genomic: TCAAATCTGGAAAATGGTGGTAAAAgtatgtatgc ... ttgccttcagTTATCATGCCCCCTTCAGCCCTGCGTCGGCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatagcttttcatgcctataaaactgctaatgcaaactctttttttgccttcagTTATCATGCCCCCTTCAGCCCTGCGTCGGCTTG
                         tgctaat  putative branch site (score: 2)
 ctctttttttgccttc  putative PPT
 tataaaact  TA-rich tract