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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatcactcttgcaatttattttttctttcttgaatcttgcatcaacagtagttggcaatgccataatggtataatgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCATGGGCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA

Basic information

species Glycine max
transcript GLYMA11G14530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14530.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------gtaatcatc-actcttgcaatttattttttctttcttgaatcttgcatcaacagtagttggcaatgccataatggtataatgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCATGGGCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
                                                 ||    |||  | |     |||  | || |  || |  ||| ||  ||         || ||||     |  |  ||   | |||||||||||||||||||| | |||||||||||||||| | ||   ||| ||| |||| ||||| ||||||||||||||||||||||||||||| || || |
gtatgaaattctcttttcgttgcatgattcttgcatgcgcgctatatgtgtgtgtatctgcacacattattattattattattatataattttaaatggttttacatttgcaac----tgtttctaattttcagTTTTTTGAGCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttgaatcttgcatcaacagtagttggcaatgccataatggtataatgcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCATGGGCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCA
                                             tataat  TA-rich tract