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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggacaggaagccaaccctagactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagtacaaatttagccttcactcctccagagtacttgaggacaggtaatatagcctttttgttattattgtttacttgagGCTAAAGGACTTTTTTTGTTAATTTCACCCCTTTCTG

Basic information

species Glycine max
transcript GLYMA11G14240.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14240.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------------------------------------------------------gtggacaggaagccaaccctagactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagtacaaatttagccttcactcctccagagtacttgaggacaggtaatatagcctttttgttattattgtttacttgagGCTAAAGGACTTTTTTTGTTAATTTCACCCCTTTCTG
                                                                                         |  |||||| |  || || || ||||| || ||||| || ||||| ||||| || ||||||| ||||||||||||||| || |||||||| || ||||| |||||||                                                                               
gtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA-------------------------------------------------------------------------------

upper sequence: GLYMA11G14240.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S122_66V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------------gtggacaggaagccaaccctagactctcttgtt--ttggactcatgaaaaatag----tagggatggcagaagctatagtacaaatttagccttcact-cctccagagtacttgaggacaggtaatatagcctttttgttattattgttt----------acttgagGCTAAAGGACTTTTTTTGTTAATTTCACCC-----CTTTCTG---------
                                                                                |  |||| |  || ||   | |  | ||  |   ||    | | | ||||||     |     | |    | |||   |  | |||     || |    ||||   |   |||     | | |     ||   | | || || | |  |          | | | |    ||  |  | |  |   ||| |  ||      |   |||         
gtattgctcttctctgtagcagttttgaactaaaacttggtatgtcccttcccgttcctatcaagtctcgacaatcctgctatacagaacacccacatcaaatacgctaatcacttttttttacggaaaataaggttttaaagtagacctatctaatctgtagattataaattgatggtctcccacgcctttgtcagGAAGGAGATCCGCGCCTCTCTTGTTTTGGCCTCATGAAGAACAGTCGCGATGGAAAAAGCTATAGTACCAATCTGGCCTACACTCCCCCTGAATACTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagagtacttgaggacaggtaatatagcctttttgttattattgtttacttgagGCTAAAGGACTTTTTTTGTTAATTTCACCCCTTTCTG
                                             tttactt  CT-rich tract
                              tttttgttattattgt  TA-rich tract