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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaaacttcaaattaattaattacttttagatttttattcatctttttctttgaagttgtttaggtaatattattaattgggagttttattaacacatttttcttaaatgttttgcttatgtacatatttcttctcaactttcattcagTTTATTTGG

Basic information

species Glycine max
transcript GLYMA11G14040.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996716|gb|BM086088.1|BM086088
EST:     AATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAG                         TTTATTTGG
genomic: AATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAGgtgattaaac ... tttcattcagTTTATTTGG
EST: gi|17023082|gb|BM094116.1|BM094116
EST:     TTGGGATAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAG                         TTTATTTGG
genomic: TTGGGATAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAGgtgattaaac ... tttcattcagTTTATTTGG
EST: gi|24205644|gb|BU964897.1|BU964897
EST:     TTGGGATAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAG                         TTTATTTGG
genomic: TTGGGATAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAGgtgattaaac ... tttcattcagTTTATTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttttcttaaatgttttgcttatgtacatatttcttctcaactttcattcagTTTATTTGG
                                 tttcttctcaactttc  CT-rich tract
     tttcttaaatgtttt  TA-rich tract