1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaggtgtttgctaatgtcttttatttgattttcataacttcaacctgttgatcctcacttttccaatttactatctaatatctatttgtactataagcagGTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACACTTTGTTCAGCTTATCATGTGGCAAGCTCTTAGAAGGAACCCCCAAACA
species | Glycine max |
transcript | GLYMA11G13470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCACACCGAAG GTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACAEST: gi|9986135|gb|BE660243.1|BE660243
genomic: TCACACCGAAGgtcacattta ... ctataagcagGTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACA
EST: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAG GTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACAEST: gi|4290610|gb|AI441643.1|AI441643
genomic: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAGgtcacattta ... ctataagcagGTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACA
EST: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAG GTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACA
genomic: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAGgtcacattta ... ctataagcagGTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACA
tgttgatcctcacttttccaatttactatctaatatctatttgtactataagcagGTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACACTTTGTTCAGCTTATCATGTGGCAAGCTCTTAGAAGGAACCCCCAAACA
aatttactatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggtgtttgctaatgtcttttatttgattttcataacttcaacctgttgatcctcacttttccaatttactatctaatatctatttgtactataagcagGTCATGTAAGCTTCTACTTTCCGGGTTCTGGGGCAATTTTTACCGGAGACACTTTGTTCAGCTTATCATGTGGCAAGCTCTTAGAAGGAACCCCCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - tgtttgc
- - - - - - - - - - - - - - - - - - - - - -cctgttg