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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcagtatatttttaaatagcacttatttgtaattaagatatttaattcatttatttctttgattgtctggtttaggaaattgcattgcgatacttcccattctgatatatctattggctattatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGAAAATTGTGAACAGCTTGGGTGGAAGAAACTTCAAGAGTATGACCCTTCT

Basic information

species Glycine max
transcript GLYMA11G13100.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395351|gb|EV265222.1|EV265222
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|58023783|gb|CX710524.1|CX710524
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|193644407|gb|FK589873.1|FK589873
EST:     CTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: CTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|192298009|gb|FG993243.1|FG993243
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|31561814|gb|CD487652.1|CD487652
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAA
EST: gi|51335190|gb|CO979056.1|CO979056
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|151399130|gb|EV269001.1|EV269001
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|298188836|gb|HO035529.1|HO035529
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|192320077|gb|FK014161.1|FK014161
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCGACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|57574613|gb|CX547588.1|CX547588
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|58023165|gb|CX709906.1|CX709906
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|193490406|gb|FK456357.1|FK456357
EST:     TTCTTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: T-CT-CTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|10254670|gb|BE822436.1|BE822436
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|6666082|gb|AW277541.1|AW277541
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGAT
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGAT
EST: gi|192298008|gb|FG993242.1|FG993242
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|298199338|gb|HO042701.1|HO042701
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGA
EST: gi|18039874|gb|BM308168.1|BM308168
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|213596494|gb|DB962054.1|DB962054
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|192295265|gb|FG986984.1|FG986984
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|19052856|gb|BM731523.1|BM731523
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|192298714|gb|FG988595.1|FG988595
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|151400466|gb|EV270280.1|EV270280
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTACTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
EST: gi|58020212|gb|CX706954.1|CX706954
EST:     GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAG                         TGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA
genomic: GTTCTCTCCAGCTTAGATTTTGGAAAATGGCAAAAAGTTGACATGTCAAGgtgaggcagt ... attatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaattgcattgcgatacttcccattctgatatatctattggctattatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGAAAATTGTGAACAGCTTGGGTGGAAGAAACTTCAAGAGTATGACCCTTCT
                         ttctgat  putative branch site (score: 3)
                                            tattatatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggcagtatatttttaaatagcacttatttgtaattaagatatttaattcatttatttctttgattgtctggtttaggaaattgcattgcgatacttcccattctgatatatctattggctattatattagTGGTTTGCAGATTTATTACCTTTCTAGTTCCAACAGCAATGGAACAGATGAAAATTGTGAACAGCTTGGGTGGAAGAAACTTCAAGAGTATGACCCTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA