1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattcaaatagtgaaaagattagaattttgaacttgtttatgcattcttgttatttttaatgacataactcttatgtttgatttgattcaattcccacagGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGC
species | Glycine max |
transcript | GLYMA11G12450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAG GTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCTTTATATEST: gi|7284072|gb|AW596671.1|AW596671
genomic: CTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGgtaaggtcat ... attcccacagGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGAT
EST: CTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAG GTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGNGATGCCATTAGATEST: gi|22523801|gb|BU082612.1|BU082612
genomic: CTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGgtaaggtcat ... attcccacagGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGAT
EST: CTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAG GTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGAT
genomic: CTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGgtaaggtcat ... attcccacagGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGAT
tcttgttatttttaatgacataactcttatgtttgatttgattcaattcccacagGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGC
ttcccac CT-rich tract
ttatttttaatgacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcaaatagtgaaaagattagaattttgaacttgtttatgcattcttgttatttttaatgacataactcttatgtttgatttgattcaattcccacagGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGC
- - - - - - gaaaagat
- - - - - - - - - - - - - - - - - - tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg