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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttactactcattcacattggccatctccctagctcacattagcctgattgaacttttctttttgcagTCCTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCC

Basic information

species Glycine max
transcript GLYMA11G12270.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12270.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------gtacttactactcattcacattggccatctccctagctcacattagcctgattgaacttttctttttgcagTCCTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCC
                             |||    | ||  |   |         |  | ||    ||    | ||| | || |  ||    ||| |||||||||| ||||| |||||||||||||| || ||||| || |||||||||||||   ||||||| |||||||| || ||||| ||  | || ||||
gtgcactttatattattatcatcattggtttatcttttatgaatgattcttgctctctcaacttttttt--tttcatttatctgtcattggctcagACCTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGGATGTTGTGGAACACGGTTAAGTCTTTCCTTGACCCAAAGACTACAGCAAAGATCC

upper sequence: GLYMA11G12270.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 3'ss of exon 4
--gtacttactactcattcacattgg--ccatctccctagctcacattagcc--tgattgaacttttct----ttttg---cagTCCTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCC
  ||  ||  ||    | ||   |     | | |||   | ||  || | ||  |  || ||||||        ||||   ||| |||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||   ||||||| |||||||| || ||||| ||  | |||||||
gtgtgatttatatctctgcatgctcaattcttttccactggtc-tatgaaccagtagtttaactttgtaacgactttggatcagACCTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTGTGGAACACGGTTAAGTCCTTCCTTGACCCGAAGACTACAGCAAAAATCC

upper sequence: GLYMA11G12270.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------gtacttactactcattcacattggccatctccctagctcacattagcctgattgaac--------ttttctttttgcagTCCTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCC
                                          |  | | | ||  ||   |      ||    | |  |  | | | ||    || |         | |   | |||||| |  |   | ||||||||||||| ||||||||||||||||| ||  |||| ||||| | | | || || |||||||| || |||||||| || || || |
gtactcattttatctgttagcctaagttgatgtgccagaacttcttgattcctttttggaaaaaaggatgcttcgactttgcctgatccaatgtggatgtggatgttctatctattgcagACACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattggccatctccctagctcacattagcctgattgaacttttctttttgcagTCCTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCC
                                        cttttctttttgc  CT-rich tract
                                         ttttcttttt  TA-rich tract