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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgccgttaattgttcctcattgtacgtgcctgtggattcctgtgacatggaaaatttatgttgtagtttcaacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG

Basic information

species Glycine max
transcript GLYMA11G12260.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12260.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttgccgttaattgttcct-------cattgtacg-tgcctgtggattcctgtgacatgga-aaatttatgttgt---------agtttcaactttt-agGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG
||||| |  |  ||||| || ||       ||||| |   |   | | |   |     | |||   ||| |||| || |         |   |||| |||  ||||  |||||||| | |||||| |||| ||||| |||||||||||| | || ||||||||||| |||||||||||||||
gtatgctttctgtaattttttcttggtcaccattgcaaaatatattttggcccaatcaaaatgtttaaacttatcttttctatttctgatcatcaattttccagGGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208266803|gb|GE061918.1|GE061918
EST:     TAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: TAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
EST: gi|193404447|gb|FK365356.1|FK365356
EST:     CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
EST: gi|8284166|gb|BE021725.1|BE021725
EST:     CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: CCAAAAGGCACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
EST: gi|193495792|gb|FK462880.1|FK462880
EST:     ACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA
genomic: ACATTGATTCAAGCACCACGATACTAGATGTTCAAGGCGTGgtatgttgcc ... caacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgcctgtggattcctgtgacatggaaaatttatgttgtagtttcaacttttagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG
                                                ctttt  CT-rich tract
                          aaaatttatgttgta  TA-rich tract