Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaatttttactttaagtcggatgcattttgcatgtagttttggtccttgacttgggcatatgcagGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACCTTATTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTAT

Basic information

species Glycine max
transcript GLYMA11G11490.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11490.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G049141_T02 (Zea mays), 3'ss of exon 4
gtgagtgcaatttttacttta-agtcggatgcattttgcatgtagttttggtccttgacttgggcatatgcagGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACCTTATTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTAT
||  |  | |||||  ||||   |    |   ||||    |    || ||    ||       |  | |  ||||| | || || ||||| ||||  || || |||||||| ||||| | |||||||||  |  | ||||||||||||||||| || ||||||||||| || |
gtacgctccattttggctttttgggtacaattatttgttttacgtttgtgaagtttatgccatgtttttatagGGTGTGATTCGTCTTCTCTCAATATGCGCAAGTGGATCACCTCTGGCAGCTAAAACACTTCTCCTTCTTGGAATTAGTGGCATACTTAAAGATATCCTTT

upper sequence: GLYMA11G11490.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtgcaatttttactttaagtcggatgcattttgcatgtagttttggtcct-----tgacttg-ggcatatgcagGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACCTTATTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTAT
||   | ||| ||||| ||| |        |||      | |  ||  ||  |      |||||||      |||||||| ||||||||||||||||| || ||||| ||||| || ||| | ||||| |||||  |  | || || || || ||||| ||||||||||||||  |||
gtagatacaacttttattttcaaaattccacatcaaaggttttcttcgggctccaaatgtgacttgtaaggcatgcagGGGTTAATCCGACTTCTTTCTACATGTGCAAGTGGGTCTCCTTTGGGAGCCAAAACTCTGCTTCTCCTAGGTATCAGTGGCATTCTTAAAGATATATTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaagtcggatgcattttgcatgtagttttggtccttgacttgggcatatgcagGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACCTTATTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTAT
                                  ccttgac  putative branch site (score: 4)
                        tagtttt  TA-rich tract