1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagctgtagtctcttcattttgtttattaatttaatccccatcggtccttgcactgattaggagtgttccatgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGT
species | Glycine max |
transcript | GLYMA11G11370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|192301026|gb|FG987981.1|FG987981
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|163921467|gb|EH038979.1|EH038979
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|120533708|gb|EH261841.1|EH261841
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|213597314|gb|DB964387.1|DB964387
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCEST: gi|151406317|gb|EV276132.1|EV276132
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|298170662|gb|HO019286.1|HO019286
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCGTTACAEST: gi|192306070|gb|FG993660.1|FG993660
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACA
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|19053954|gb|BM732621.1|BM732621
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtagctgtag ... tgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
ttaatttaatccccatcggtccttgcactgattaggagtgttccatgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGT
ttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctgtagtctcttcattttgtttattaatttaatccccatcggtccttgcactgattaggagtgttccatgatgtgtagGGGAGAAAGGAAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA