1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taacattaggtcgttttattaactgatttgttgtgatctttggttcttttatttgtgagattgttggcatatttaatttattgccattcattattttcagGCACCATTATTAAAAGAGTATCCTGCAAATCTGTCTGTCACAGCATATTCATTCTTCTTTGGAGTTGCACTGATGGTGGTTGCATCATTATTCATGGTTA
species | Glycine max |
transcript | GLYMA11G09540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTTGATAGGGAACTGCATCTGTATGGCTGCTTTTCTAGCCATTCAG GCACCATTATTAAAAGAGTATCCTGCAAATCTGTCTGTCACAGCATATTCAEST: gi|192325573|gb|FK019429.1|FK019429
genomic: TTTTCTTGATAGGGAACTGCATCTGTATGGCTGCTTTTCTAGCCATTCAGgtatctactc ... ttattttcagGCACCATTATTAAAAGAGTATCCTGCAAATCTGTCTGTCACAGCATATTCA
EST: TTTTCTTGATAGGGAACTGCATCTGTATGGCTGCTTTTCTAGCCATTCAG GCACCATTATTA
genomic: TTTTCTTGATAGGGAACTGCATCTGTATGGCTGCTTTTCTAGCCATTCAGgtatctactc ... ttattttcagGCACCATTATTA
cttttatttgtgagattgttggcatatttaatttattgccattcattattttcagGCACCATTATTAAAAGAGTATCCTGCAAATCTGTCTGTCACAGCATATTCATTCTTCTTTGGAGTTGCACTGATGGTGGTTGCATCATTATTCATGGTTA
atttaat putative branch site (score: 4)
ttattttc putative PPT
atatttaatttattgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacattaggtcgttttattaactgatttgttgtgatctttggttcttttatttgtgagattgttggcatatttaatttattgccattcattattttcagGCACCATTATTAAAAGAGTATCCTGCAAATCTGTCTGTCACAGCATATTCATTCTTCTTTGGAGTTGCACTGATGGTGGTTGCATCATTATTCATGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattca