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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccaatttatcttttatcttgaatgtgattatttttatttccttgtttaagtggctcttcagtgtgtctatggtgatcaaatttcagaatcatgacccctgatgactaaaaattttttttttcttgtactggaacttactctgccttcacatttatcagGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGAC

Basic information

species Glycine max
transcript GLYMA11G08180.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08180.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttccaatttatcttttatcttgaatgtgattatttttatttccttgtttaagtggctcttcagtgtgtctatggtgatcaaatttcagaatcatgacccctgatgactaaaaattttttttttcttgtactgg-aacttactctgccttcacatttatcagGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGAC
                                                                     ||  || | || ||  |  || | |    ||   |   |    || |   || ||  || |||       ||  || | |   | |   |||  ||||||||| || |||||||  || | ||| || || ||||| || || |||||||| || ||||||||||||||||||||||  || ||||| ||||| || 
---------------------------------------------------------------------gtaactttagtaat--acgtttacatgtgtgttactaaaattttagagtcttattactttttgagtaattaagctattgttgttgcttgttt-ccagGAAGGATAGCCGTTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGAT

upper sequence: GLYMA11G08180.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 3'ss of exon 3
gtaagttccaatttatcttttatcttgaatgtgattatttttatttccttgtttaagtggctcttcagtgtgtctatggtgatcaaatttcagaatcatgacccc-tgatgactaaaaattttttttttcttgtactggaactta-ctctgcctt--cacatttatcagGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGAC
                                                                      | || ||        ||||        || |  |  | ||   ||  |  || || |||  |  | ||  ||||| || ||| ||    | || ||||||||||| || ||||||| ||| |||||||||||    ||||||||||| ||||| || ||||| ||||||||||||||||||||  |||||||||| |||
---------------------------------------------------------------------ttctcaataacagcagaattgtcattctattatacagttatctttaggacattattatttaatacagtgttacttatctttgctttgtttctttgatcagGAAGGATAGCCGTTATAGTGAGAAAGATGCAGCAAAAGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTCTGGTACACCGTGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaaaattttttttttcttgtactggaacttactctgccttcacatttatcagGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGAC
                            aacttac  putative branch site (score: 2)
                                       ccttcac  putative PPT
     aaattttttttttctt  TA-rich tract