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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattgggacttgtaattttagtatatacttgttgtaaaacactattgattgttttttctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTC

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtattgggact--tgtaattttagtatatacttg-ttgtaaaacactattgattgttttttctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTC
||| ||  |     |    |||||||  ||| ||  || || |||   | | |||||  |  |||||| ||  ||||| ||||||||| ||||||| ||||| |||||||||||||| ||||| || || | ||| |||| ||  ||||| |||||| |  ||||||| || |||
gtgggtgctcaatttaccttaattttcttatctatgtgcttataagttattcttgatcctcatttctaatttcagGGGTCCATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13791595|gb|BG654186.1|BG654186
EST:     TACTTCCTTGATTGG                         GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
genomic: TACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG                         GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG                         GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: gi|7233548|gb|AW568953.1|AW568953
EST:     ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG                         GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: gi|193569709|gb|FK523562.1|FK523562
EST:     ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG                         GGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCC
EST: gi|193559721|gb|FK515010.1|FK515010
EST:     ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGG                         GGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGC
genomic: ATATTTGATGTAAAGCGACTTCAGATGTGCTATTCTACTTCCTTGATTGGgtgagtattg ... ctacttctagGGG-ACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttagtatatacttgttgtaaaacactattgattgttttttctacttctagGGGACCATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTC
                              tattgat  putative branch site (score: 3)
                                    ttgttttttctacttc  CT-rich tract
                              tattgattgtttttt  TA-rich tract