1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttagccatttttttctttttaaatttagatgaaagcgtgattgacttggtactggtttttgatggtgagctgacatttaatgtgcttggcatcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGGT
species | Glycine max |
transcript | GLYMA11G07810.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|6725714|gb|AW310113.1|AW310113
genomic: CATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGTTCCGCTGCATCCCCATATCTACAGTANCGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|15664873|gb|BI702244.1|BI702244
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|16343412|gb|BI969007.1|BI969007
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|151393796|gb|EV263671.1|EV263671
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|254317299|gb|GR826244.1|GR826244
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|10238896|gb|BE807792.1|BE807792
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|254317300|gb|GR826245.1|GR826245
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCAEST: gi|14516420|gb|BI095092.1|BI095092
genomic: TCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
EST: CCGGGTCCGGTGCATCCCCATATGTACAGTAACGGCCAACATTTGTTTAG ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
genomic: CCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCC-ACATTTGTTTAGgtatgtctgt ... catcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCA
cttggtactggtttttgatggtgagctgacatttaatgtgcttggcatcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGGT
acatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccatttttttctttttaaatttagatgaaagcgtgattgacttggtactggtttttgatggtgagctgacatttaatgtgcttggcatcatgcagATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -agccatt
- - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgg