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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC

Basic information

species Glycine max
transcript GLYMA11G07530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os02g47600.2 (Oryza sativa), 3'ss of exon 4
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
                                                                  | | ||   |   | |   ||||| |         | | ||     | ||  | ||   | |||   |  |  ||||   | |  | | | |   |         | ||||||||||| ||||||||||||| || || |||||||||||||||||||| || ||| | ||  ||||||| ||| |||| || |||||||| || || |
-----------------------------------------------------------------agtaggatggttagtgacagggataatgcgaggggctgcaataaacgacttattttcaacattgacaaaagag-aact---tgaaaattttacctgt------gtttcagGTTGATCGTGTTCTTTACTCATCTGTTGTTTACCCACACAACTATGGTTTCATTCCACGCACACTTTGTGAGGACGGTGACCCCATGGACGTCCTCGTCC

upper sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G18230.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtct-gtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
                                                            | |||| | |       |||||        | ||||  | | |  ||     |   || |  | | | ||||| | ||||  || |  |  ||| ||  |  ||         |||||||||||  |||| ||||||||  | || ||||| |||||||| ||||| |||||  |||| || ||||||||||||||||| ||||| || ||||| |
------------------------------------------------------------atatatcataagtcacattttat-------gcattccaactaaatatccttcaccgtaagagtcgaaatgaagaaaaact--ctgatcactgaaagttttcctc-------tctagGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCCCACAACTACGGTTTCATCCCTCGAACTATCTGTGAAGACAGTGATCCAATGGATGTCCTGGTAC

upper sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 3
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcattt-accatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
                                                                         || ||| || |    |  || | |   |  |  || ||  | ||| ||| || ||| ||  |||   |  |  |||| |||||   |  ||   | ||  |||||||||||| |||||||||||||||| || || ||||| ||||||||||| |||||  ||||||| ||||||||||| ||||||||||| || ||| |||
----------------------------------------------------------------------tttttgcttatattgctgttatagtgttgctagattatatctga-tttgtgtatgcactcaa-tata-taagatagctaaagaatggagttctc---caaaaatagGTTGATCGTGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTC

upper sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 3'ss of exon 5
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
                                                   |||  |    | |   |  ||||  || | ||   |||  | |  ||||  | | |  ||| | |  || ||   || || ||       |||  |||        || | |  |     | |||||||||||||  | ||||||||||| ||||| |||||||| ||||| || || ||| | ||  ||||||| ||    ||||| || || || || ||  
---------------------------------------------------gtacgtc---attgccagtgactaactctaaac--gatcttgtcttcat--atcttcacga-gctgttggcttggctcaaccaccg----ctccttaat-------cttaacctcatttttcagGTTGATCGTATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928719|gb|BU545858.1|BU545858
EST:     AGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTNATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|33390382|gb|CA853577.1|CA853577
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|10235681|gb|BE804569.1|BE804569
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|58018488|gb|CX705230.1|CX705230
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|151395789|gb|EV265666.1|EV265666
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|254328447|gb|GR835412.1|GR835412
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|58014268|gb|CX701010.1|CX701010
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192310085|gb|FK000649.1|FK000649
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192316515|gb|FK009312.1|FK009312
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192331258|gb|FK023769.1|FK023769
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192310086|gb|FK000650.1|FK000650
EST:     AAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192321263|gb|FK014353.1|FK014353
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|58022382|gb|CX709123.1|CX709123
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|58017496|gb|CX704238.1|CX704238
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|31469770|gb|CD411798.1|CD411798
EST:     AGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|151402592|gb|EV272405.1|EV272405
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|15661703|gb|BI699074.1|BI699074
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192333274|gb|FK026155.1|FK026155
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|7686402|gb|AW757050.1|AW757050
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|209729103|gb|BW655080.1|BW655080
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|37996150|gb|CF807739.1|CF807739
EST:     AGGAAGTAAGGTTAAGTATGAGCGTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AGGAAGTAAGGTTAAGTATGAGC-TGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192333273|gb|FK026154.1|FK026154
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|22930561|gb|BU547700.1|BU547700
EST:     ATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: ATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|15203687|gb|BI426455.1|BI426455
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|11273956|gb|BF324342.1|BF324342
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|21595665|gb|BQ610566.1|BQ610566
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|213596795|gb|DB964086.1|DB964086
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|26057763|gb|CA800677.1|CA800677
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|19452855|gb|BM954265.1|BM954265
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|58017619|gb|CX704361.1|CX704361
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|12689521|gb|BG155857.1|BG155857
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGGCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|151406239|gb|EV276054.1|EV276054
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|254336463|gb|GR842642.1|GR842642
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|17022265|gb|BM093299.1|BM093299
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|15814337|gb|BI786612.1|BI786612
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|6481455|gb|AW200726.1|AW200726
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192321262|gb|FK014352.1|FK014352
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192316544|gb|FK009313.1|FK009313
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|9986810|gb|BE660918.1|BE660918
EST:     AAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTTGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|192294924|gb|FG986647.1|FG986647
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: gi|209711074|gb|BW676430.1|BW676430
EST:     AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG                         GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
             ataactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA