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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcatcctctctataactcttccttttaatttcttttcccttgacacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaataacctgactacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG

Basic information

species Glycine max
transcript GLYMA11G06900.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06900.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatcatcctctctataactcttccttttaatttcttttcccttgacacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaa----taacctgacta------caatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG
                                                                                   |    | ||| |  | || | | || |||   |||| ||| ||||  |        ||   ||| |         || |||||||| ||| | |||||||| ||||||| |||||| || || ||||| ||||||||||| ||||| ||  | ||  || | ||||| ||  | ||||| |
-----------------------------------------------------------------------------------gtgtgttttcgtagtaaaaagatctctct---ttttctcagttcagctttggaatgtattttgattgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTG

upper sequence: GLYMA11G06900.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 4
gtaagatcatcctctctataactcttccttttaatttcttttcccttg--acacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaataacctgactacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG
                  ||| |    ||| |  || |||     |||  |  |   | ||  ||| |||||   |  |  ||   | |  |  |  ||  |   ||  |||| | ||||| |||    |  |  | |    | |||   |  |||||||| ||||| |||||| ||||||| | ||||||| | |||||||| |||||||||||||||||||| ||||||||||| || |||||| ||||||| |
-----------------gtaagttcatcttgttcttgcttaatatttgcaattctgttgtttcgagattgaga--atctattgattctcagggac-cttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193493344|gb|FK463062.1|FK463062
EST:     AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAA                         GTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTA
genomic: AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcat ... tacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTA
EST: gi|21639096|gb|BM140142.1|BM140142
EST:     ACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAA                         GTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTT
genomic: ACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcat ... tacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTT
EST: gi|213619480|gb|DB963418.1|DB963418
EST:     AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAA                         GTTGCATGGTTGTA
genomic: AGCTTGTACATGAGCAAGCCCGCGGGATAATTTTCACAGCACTTGATGAAgtaagatcat ... tacaatacagGTTGCATGGTTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatagctttctttattttttcacttcatttccaataacctgactacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG
        tttctttattttttca  TA-rich tract