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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttaagatgtatcgttttgttgctttctggtttctttctataagtttgactgtgggtcatgttatgctctattatgtttgttctatcgatgatacttttctgagttgagtttaatgcttttattgtttttcttatctagGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 4
gtaaagttaagatgtatcgttttgttgctttctggtttctttctataagtttgactgtgggtcatgttatgctctattatgtt-tgttctatcgatgatacttttctgagttga--gtttaatgcttttattgtttttcttatctagGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
                                  || |    ||||   | |||   |  |||   ||||  |    |   ||   || | | ||| |||    |   |    |   |||  |     | |  || || | ||  ||| |||  ||| ||||  ||| |||| ||  | || ||||||||||| || ||||| |||||||||||||| ||||||||  |||| |||||| | ||  |
----------------------------------gtattgaactattgatctgaacttttgtccaattattattcgctgctttgcattatttggatcatatccatacaaaccaatgattttttttgcatgtatttgttgtaatacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 4
gtaaagttaagatgtatcgttttgttgctttctggtttctttctataagtttgactgtgggtcatgttatgctctattatgtttgttcta-tcgatgatacttttc---tgagttgagtttaatgcttttat-tgttt-ttcttatctagGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
             |||| |   | ||| | |    |||  | | || | | |  |  ||  |    ||||  |  || || |   | | |  | |||||  ||||    ||  ||   | ||||  ||  || | ||| || | ||  ||| |||  ||| ||||  ||| |||| ||  | || ||||||||||| || ||||| |||||||||||||| ||||||||  |||| |||||| | ||  |
-------------gtattgaactattgatctgaacttttgtccaattattatt-cgctgctttgcattat-ttggatcatatccatacaaaccaatgattttttttgcatgtatttgttgtaatttttgcatgtatttgttgtaatacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtaaagttaagatgtatcgttttgttgctttctggtttctttctataagtttgactgtgggtcatgttatgctctatta-tgtttgttctatcgatgatacttttctgagttgagtttaatgcttttattgtttttcttatctagGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
                        | | || || |  | || | |   || |   |    || |||   |||   |||  ||||   | |     || |   |||||  |||   |  |  |  | ||  | |  ||||||| | | ||||  | |  | | ||||||||  |||||| || ||| ||||||| ||||| || ||| |||  |||||||| || |||||||||||||| |||||| |||||||||||||||||||
gcagggaacctctataactccctgaatcaacattttgctttctttattttacatatggaattttattgctttatttgttagtcaatatttcaagaataagcttttgtagtatttttatttttaatttgtttggcatttaatgttctcattgcatcttatgtgtagGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgatgatacttttctgagttgagtttaatgcttttattgtttttcttatctagGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
                        gtttaat  putative branch site (score: 4)
                                cttttattgtttttct  CT-rich tract
                         tttaatgcttttattg  TA-rich tract