Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtacattgtttgtagctatgttattgtgtttgtttttaatatattatgtgcatttattgtctgatgagtttttatttttacttataacctttgcacgtttttcgttgcagAGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAG

Basic information

species Glycine max
transcript GLYMA11G06550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06550.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G15680.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgtacattgtttgtagctatgttattgtgtttgtttttaatatattatgtgcatttattgtctgatgagtttttatttttacttataacctttgcacgtttttcgttgcagAGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAG
| ||||| || | | |||||| ||| | | || | | || | | | | | | | ||| | | | | | ||||||||||| |||||||| ||||| || ||||||||||| ||| |||| || || |||||
-------------------gtttgtta--gtctctctttttag---attcttttcaacaaa-atgtggttactgccttgctaaaagaagaacatctc----tcgtgaatggcagAGAAGCTATGGTCTGGACTTGAGAACTTTGTTTTTGATTGGCTAATCAACGCTGACAG

upper sequence: GLYMA11G06550.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtacattgtttgtagctatgttattgtgtttgttt--ttaatatattatgtgcatttattgtctgatgagtttttatttttacttataacctttgcacgtt-tttcgttgcagAGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAG
||||| || || |||||| | | | || | ||||| |||| | | || | | || ||||||| ||||| ||||||||||||||||||||||| ||||| ||| |||| ||||| |||||
-------------------------------gtttggttaattgttatattgcctttgcatttcaacttgtatttttttgttttaggtaaactgaaatgggcttaacctcattgcagAAAAGCTTTGGTCTGGGCTTGAAAATTTTGTCTTTGATTGGCTAATCAATGCTGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtctgatgagtttttatttttacttataacctttgcacgtttttcgttgcagAGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAG
                          ttataac  putative branch site (score: 2)
 tttttcgtt  putative PPT
 atgagtttttattttt  TA-rich tract