1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatctccatccatctttcctttgatttctgttatggtcatggaatgaagctcatatttgcctatttggtttcttttagGCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTACAGGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACT
species | Glycine max |
transcript | GLYMA11G06080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAGCTATTGAATGGAACACACAAGGCTCATGTACACTCTGCAGAAGAG GCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTGEST: gi|24135607|gb|BU926117.1|BU926117
genomic: CCAAGCTATTGAATGGAACACACAAGGCTCATGTACACTCTGCAGAAGAGgtatctccat ... tttcttttagGCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTG
EST: CCAAGCTATTGAATGGAACACACAAGGCTCATGTACACTCTGCAGAAGAG GCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTG
genomic: CCAAGCTATTGAATGGAACACACAAGGCTCATGTACACTCTGCAGAAGAGgtatctccat ... tttcttttagGCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTG
atttctgttatggtcatggaatgaagctcatatttgcctatttggtttcttttagGCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTACAGGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACT
ctttgat putative branch site (score: 5)
tttctttt putative PPT
tttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctccatccatctttcctttgatttctgttatggtcatggaatgaagctcatatttgcctatttggtttcttttagGCTGAGATTCTTTCAAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTACAGGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC