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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcttatgcttgaatataattaaaaagtaagatcattctacttttatcatacaacttcttaacttagttttatctacattcaagttagatttggattttatcagacaagaaactaaaaatatgggggattaatctttcaaccttttcttttgtggtcttgtaaatgatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCATTGCCATTCCAAGCATATTAAAGCATGCTGGGGTTATCGGTTGGGGAGCC

Basic information

species Glycine max
transcript GLYMA11G04420.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408863|gb|EV278671.1|EV278671
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|12773182|gb|BG238109.1|BG238109
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298183465|gb|HO028678.1|HO028678
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|31306393|gb|CD391596.1|CD391596
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192298731|gb|FG990997.1|FG990997
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192312780|gb|FK003992.1|FK003992
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298197449|gb|HO044928.1|HO044928
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192295310|gb|FG985964.1|FG985964
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192312779|gb|FK003991.1|FK003991
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|192332695|gb|FK025352.1|FK025352
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|254318802|gb|GR830366.1|GR830366
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298196857|gb|HO041600.1|HO041600
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|298180781|gb|HO022220.1|HO022220
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|208325806|gb|GE124514.1|GE124514
EST:     TGTTCTTTGGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: TGTTCTTT-GCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
EST: gi|10848287|gb|BF071708.1|BF071708
EST:     CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG                         CTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaactctt ... gatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgggggattaatctttcaaccttttcttttgtggtcttgtaaatgatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCATTGCCATTCCAAGCATATTAAAGCATGCTGGGGTTATCGGTTGGGGAGCC
      gattaat  putative branch site (score: 3)
       attaatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaactcttatgcttgaatataattaaaaagtaagatcattctacttttatcatacaacttcttaacttagttttatctacattcaagttagatttggattttatcagacaagaaactaaaaatatgggggattaatctttcaaccttttcttttgtggtcttgtaaatgatggagcagCTGGGTAAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGCATTGCCATTCCAAGCATATTAAAGCATGCTGGGGTTATCGGTTGGGGAGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG