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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttccttgtgcatgttttgtggacttgtaatagtttctatttaatgcagctagctaagcgatagtcacaacatctttaatgcttatgacttatgagcagattctttaattgcaatgtaactactagttgtttgtttaaaggggaggggagagctttctaatttattttttttgccgttttgcagTGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAGTATTTCTTTGGATGATGGCAGTTCTTACAATATTGTGTGCATCATATTG

Basic information

species Glycine max
transcript GLYMA11G02540.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310356|gb|FK002236.1|FK002236
EST:     ATTAGATGCAGGTACAAGGCTGGAAAAA-TGCTGACGACTACTTC--CTG                         TGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAG
genomic: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttcc ... cgttttgcagTGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAG
EST: gi|254341536|gb|GR852673.1|GR852673
EST:     ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTG                         TGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAG
genomic: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttcc ... cgttttgcagTGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAG
EST: gi|213597069|gb|DB968164.1|DB968164
EST:     ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTG                         TGTCTGTGCAGCTGTACTC
genomic: ATTAGATGCAGGTACAAGGCTGGAAAAAATGCTGACGACTACTTCATCTGgtgagcttcc ... cgttttgcagTGTCTGTGCAGCTGTACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttaaaggggaggggagagctttctaatttattttttttgccgttttgcagTGTCTGTGCAGCTGTACTCACCATTTCGACCAGCTGTTGACATAGCAGAAGTATTTCTTTGGATGATGGCAGTTCTTACAATATTGTGTGCATCATATTG
                         ttctaat  putative branch site (score: 2)
 ttttttttgccgtttt  putative PPT
 agctttctaatttatt  TA-rich tract