1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatgatgctgttgatatggaatttatttgcaattgattttcatgttgtgctaaatcttattgccattcttgcctttgaacggcatttttctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATAT
species | Glycine max |
transcript | GLYMA11G01960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAG ATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGEST: gi|16106233|gb|BI893973.1|BI893973
genomic: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattt ... ctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
EST: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAG ATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGEST: gi|192295390|gb|FG987004.1|FG987004
genomic: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattt ... ctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
EST: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAG ATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTA-GEST: gi|193487292|gb|FK452273.1|FK452273
genomic: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattt ... ctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
EST: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAG ATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGEST: gi|208214613|gb|GE012902.1|GE012902
genomic: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattt ... ctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
EST: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAG ATTCCTGAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGEST: gi|192305248|gb|FG997528.1|FG997528
genomic: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattt ... ctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
EST: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAG ATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
genomic: GTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattt ... ctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAG
ttgtgctaaatcttattgccattcttgcctttgaacggcatttttctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATAT
tgctaaa putative branch site (score: 2)
catttttct putative PPT
taaatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgatgctgttgatatggaatttatttgcaattgattttcatgttgtgctaaatcttattgccattcttgcctttgaacggcatttttctgaactcagATTCCTAAAGATGATGAGGGAGAGCCAATGTATGAAGAATTCATATGTAAGGCATGCTCTGAGGTATGCTTCTTTCTAAAGTTATATCCTGAAGAAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - tgctgtt
- - - - - - - - - - - - - tttgcaa
- - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcattt