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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactaggagtgtttgttggtaggtgaaacttggttttgatttgaattctgtgttttcgccatctgatatgatgtttatttttcagCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCG

Basic information

species Glycine max
transcript GLYMA11G01940.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346734|gb|BM891614.1|BM891614
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGG
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tatttttcagCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGG
EST: gi|19346921|gb|BM891809.1|BM891809
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGG
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tatttttcagCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGG
EST: gi|8283435|gb|BE020996.1|BE020996
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCA
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tatttttcagCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttgatttgaattctgtgttttcgccatctgatatgatgtttatttttcagCTTATCATTGAAGAAATTTGTCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATATTGTTAAGATACTTCAACCCAGTCGGTGCACACCCTAGCG
                              atctgat  putative branch site (score: 4)
                                           tttatttttc  putative PPT
                                   atatgatgtttatttt  TA-rich tract