Sequence
atgc intronic sequence ATGC exonic sequencegtaggagttttgcactttaattttgttcaagtcctctgtaatataaattggcagtctaatttgtgccttttctgcagCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACCTGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAA
Basic information
| species | Glycine max |
| transcript | GLYMA11G01170.2 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G01170.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0039g01810.t01 (Vitis vinifera), 3'ss of exon 8
---gtaggagttttgcactttaattttgttcaagtcctctgtaatataaattggcagtctaatttgtgccttttctgcagCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACCTGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAA
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gtgagatgatctttatctgttgacatgtcttgaaatgtctgtgatattatta------caaatttggagttggattgcagCTTCTACACTTATTCGGGAGGTTATCAAATATGCTTCAAGTATTCCTACATGCCGAGGAGTTTATTTGCACGTTATTAGTTACAACAATCCTGCCATTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328765|gb|FK022551.1|FK022551EST: CTCAGCTAAATCTGACCAAACTTTAGTCTATGTTCTGACGCTTGGAGTAGTGGAAGCATATAGAAGTCTTGGAGTAG
genomic: CTCAGCTAAATCTGACCAAACTTTAGTCTATGTTCTGACGCTTGGAGTAGTGGAAGCATATAGAAGTCTTGGAGTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttcaagtcctctgtaatataaattggcagtctaatttgtgccttttctgcagCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACCTGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAA
gtctaat putative branch site (score: 3)
tttgtgccttttct CT-rich tract
tctgtaatataaatt TA-rich tract
