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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaatggcttctgtctctttttatcttgttttctctgttctttattggatggggatattgcatatctaatagtgtaaaacatacctttatctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCCGAAATGATTGGAAAGGAGA

Basic information

species Glycine max
transcript GLYMA11G00890.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180407|gb|HO021960.1|HO021960
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAG
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAG
EST: gi|209702289|gb|BW652369.1|BW652369
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|6455572|gb|AW186255.1|AW186255
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|13790477|gb|BG653068.1|BG653068
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|9564182|gb|BE473691.1|BE473691
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|58023319|gb|CX710060.1|CX710060
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|208280503|gb|GE075031.1|GE075031
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|6072640|gb|AW102027.1|AW102027
EST:     GTAACCAGGTGAAGAGGACCTGNTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|298168802|gb|HO009732.1|HO009732
EST:     GTAGCCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|15813962|gb|BI786237.1|BI786237
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCA
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCA
EST: gi|6072903|gb|AW102290.1|AW102290
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATGATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|207741026|gb|GD714404.1|GD714404
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|8826958|gb|BE210688.1|BE210688
EST:     GTAACCATGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCATGGA-GATGAGAGAGATAATGGTCAACCAAGCAACAGCCTGTGA
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCA-GGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGA
EST: gi|298170667|gb|HO019291.1|HO019291
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGA
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGA
EST: gi|23727546|gb|BU761807.1|BU761807
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|192307342|gb|FK000726.1|FK000726
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|4292422|gb|AI437760.1|AI437760
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCANATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCA
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCA
EST: gi|37995080|gb|CF806669.1|CF806669
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|193337326|gb|FK303700.1|FK303700
EST:     ACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: ACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|13791308|gb|BG653899.1|BG653899
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|298193302|gb|HO033736.1|HO033736
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGG
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGG
EST: gi|7458646|gb|AW666096.1|AW666096
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|19053253|gb|BM731920.1|BM731920
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATG
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATG
EST: gi|23727433|gb|BU761746.1|BU761746
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|21256109|gb|BQ452997.1|BQ452997
EST:     CACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: CACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|208125783|gb|GD922017.1|GD922017
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|298187155|gb|HO034304.1|HO034304
EST:     GTAACCAGGTGAAGAGGACCTGTTACGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAAT
EST: gi|7685314|gb|AW755962.1|AW755962
EST:     TAACCAGGTGAAGAGGACCTGTTATGCACTATCGAGCGCAA-TCACACAT                         ATTCGCATGAAGATGATATAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: TAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGC-CAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|17021860|gb|BM092894.1|BM092894
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAAC
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAAC
EST: gi|298170351|gb|HO018975.1|HO018975
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|31458532|gb|CD400560.1|CD400560
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|19269561|gb|BM885817.1|BM885817
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCANGAAGATGAGAGAGATAATGGTCAACCAAGCA
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCA
EST: gi|213607261|gb|DB957125.1|DB957125
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|57575225|gb|CX548200.1|CX548200
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|7285795|gb|AW598282.1|AW598282
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAGATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAGTGGTCAACCAAGCAGCAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|58022410|gb|CX709151.1|CX709151
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|120496269|gb|EH224436.1|EH224436
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|298176257|gb|HO015662.1|HO015662
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGA
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGA
EST: gi|192317788|gb|FK010178.1|FK010178
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|6848435|gb|AW350725.1|AW350725
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|192308959|gb|FK001735.1|FK001735
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|23727850|gb|BU761961.1|BU761961
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|193388721|gb|FK353480.1|FK353480
EST:     TAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGA
genomic: TAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGAC-AGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGA
EST: gi|208154137|gb|GD956170.1|GD956170
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|51335530|gb|CO979396.1|CO979396
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|58022183|gb|CX708924.1|CX708924
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|192308958|gb|FK001734.1|FK001734
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|193568948|gb|FK524809.1|FK524809
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|23064624|gb|BU579397.1|BU579397
EST:     GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCCACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
EST: gi|4437091|gb|AI522956.1|AI522956
EST:     GTAACCAGGTGAAGAGGACCTGCTATGCACAATCGAGCCAAATCAGACAG                         ATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT
genomic: GTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAATCAGACAGgtatagttac ... tctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggatggggatattgcatatctaatagtgtaaaacatacctttatctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCCGAAATGATTGGAAAGGAGA
                   atctaat  putative branch site (score: 3)
                                     tacctttatctttttc  putative PPT
                                         tttatcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaaatggcttctgtctctttttatcttgttttctctgttctttattggatggggatattgcatatctaatagtgtaaaacatacctttatctttttcagATTCGCAGGAAGATGAGAGAGATAATGGTCAACCAAGCAACAGCATGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCCGAAATGATTGGAAAGGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - -ggatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacct