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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttaattaaataatgttcctagcttacgatttcttaatcagtgaaacagttgagttgacaatgacattgatgggtactcactggttttcagAACCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAG

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 4
---gtgagtgttaattaaataatgttcctagc-ttacgatttcttaatcagtgaaacagttgagttgacaatgacattgatgggtactcactggttttcagAACCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAG
   | |  |  |  || | | ||  |  |    ||   || | ||  | |  ||  || | ||    |   |   | |   | | || |     || |||||| |||||||||| |||||||| ||||||||| || |||||  ||||||| |||||||| ||||| ||||| ||||| |||||||| |||||||||||||
gtagggttttctcttttactgatagttttgatattgtcatctattttttaaagattcattagaacaaaattttctaatc-cgaggacgc-----ttatcagAATCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagtgaaacagttgagttgacaatgacattgatgggtactcactggttttcagAACCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAG
                                      tactcac  putative branch site (score: 1)
                                                ttttc  putative PPT