1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttccttttccccctattgacagtagtcttttatatcctgtgtgtatttatctttaattatacaaatactgttggattaattcttttaaattttttctttaatatctgcagTTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCAATGTGAGCCAATACCTTTGCATTGGGCGCTTTTCAGCTGTTTCCTTCCAGGTTTTAGGCC
species | Glycine max |
transcript | GLYMA11G00210.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTCAGTGGCAAATTGATAACCAACTATAAGATGTCTTCTGGTGCCATT TTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCAEST: gi|5606254|gb|AI900352.1|AI900352
genomic: ACCTCAGTGGCAAATTGATAACCAACTATAAGATGTCTTCTGGTGCCATTgtaagttcct ... atatctgcagTTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCA
EST: ACCTCAGTGGCAAATTGATAACCAACTATAAGATGTCTTCTGGTGCCATT TTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCAATGTGAGCCAAEST: gi|208313377|gb|GE117305.1|GE117305
genomic: ACCTCAGTGGCAAATTGATAACCAACTATAAGATGTCTTCTGGTGCCATTgtaagttcct ... atatctgcagTTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCAATGTGAGCCAA
EST: ACCTCAGTGGCAAATTGATAACCAACTATAAGATGTCTTCTGGTGCCATT TTATTCATTCTTCTTTCATGCTCGCTAG
genomic: ACCTCAGTGGCAAATTGATAACCAACTATAAGATGTCTTCTGGTGCCATTgtaagttcct ... atatctgcagTTATTCATTCTTCTTTCATGCTCGCTAG
attatacaaatactgttggattaattcttttaaattttttctttaatatctgcagTTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCAATGTGAGCCAATACCTTTGCATTGGGCGCTTTTCAGCTGTTTCCTTCCAGGTTTTAGGCC
tgttggattaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttccttttccccctattgacagtagtcttttatatcctgtgtgtatttatctttaattatacaaatactgttggattaattcttttaaattttttctttaatatctgcagTTATTCATTCTTCTTTCATGCTCGCTAGCTGTATTTTGCAATGTGAGCCAATACCTTTGCATTGGGCGCTTTTCAGCTGTTTCCTTCCAGGTTTTAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT