Sequence
atgc intronic sequence ATGC exonic sequencegtatttttctttagaactcattggctctcaggcatactgaattactgatatatatatctttggttttcctccattctctccgtctctcctctctccctttacattatgtctttttcaatatacaaattaaaaaaaattcatcttcaatattgtgattttatgttcctatttcatatcttcttagACACCCATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCA
Basic information
species | Glycine max |
transcript | GLYMA10G44440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G44440.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 6
gtatttttctttagaactcattggctctcaggcatactgaattactgatatatatatctttggttttcctccattctctccgtctctcctctctccctttacattatgtctttttcaatatacaaattaaaaaaaattcatcttcaatattgtgattttatgttcctatttcatatcttcttagACACCCATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCA
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-----gtatactatacctggttagctc----gtttgaagaa--actca-acttgtttctttgaagtt----tactctttccagttttc----atacctttcccttgtgtctgatcttg-atacggac------aaatacatatt--atatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT-
upper sequence: GLYMA10G44440.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0124g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtatttttctttagaactcattggctctcaggcatactgaattactgatatatatatctttg-gttttcctccattctctccgtctctcctctctccctttacattatgtctttttcaatatacaaattaaaaaaaattcatct--tcaatattgtgattttatgttcctatttcatatcttcttagACA-CCCATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCA
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-------------------------------gta-gttaatttatgggcatctttctttatgtgcatgtattccatatctgatactaatctagaaccaactacatttaatgtagttgagatttaaagctttcttaaattaatttggttactattttttttttcatttttgttttcctctttttttagGCAACCTGTACTTCAGGGTGATAACTGGTGGCGAGGTCATGCAGCAGCCTTTCTGAAATATGTTCGTTTATCCCCAGAAGTACTTCGACTAGGTCGTGTT- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaaattcatcttcaatattgtgattttatgttcctatttcatatcttcttagACACCCATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCA
tttcatatcttctt CT-rich tract
aatattgtgattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttttctttagaactcattggctctcaggcatactgaattactgatatatatatctttggttttcctccattctctccgtctctcctctctccctttacattatgtctttttcaatatacaaattaaaaaaaattcatcttcaatattgtgattttatgttcctatttcatatcttcttagACACCCATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC