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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtagaccatttcttgtgtaaagcatagttaatgcttattagaactgatgcaaatgtgtactgacttctgattaatcgtgtggtgaatattcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCT

Basic information

species Glycine max
transcript GLYMA10G44070.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172736|gb|HO019776.1|HO019776
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTA
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTA
EST: gi|193530561|gb|FK484898.1|FK484898
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|17020875|gb|BM091909.1|BM091909
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|193712621|gb|FK649728.1|FK649728
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|193556985|gb|FK516142.1|FK516142
EST:     GAGATAGTCCTCTGCTTTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|151396981|gb|EV266854.1|EV266854
EST:     GAGATAGTCCTCTGTTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|151401442|gb|EV271256.1|EV271256
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|15663781|gb|BI701152.1|BI701152
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|192305408|gb|FG998276.1|FG998276
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTACCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|193343740|gb|FK311500.1|FK311500
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|7691278|gb|AW759472.1|AW759472
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|193513369|gb|FK471477.1|FK471477
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
EST: gi|193343638|gb|FK310250.1|FK310250
EST:     GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT
genomic: GAGATAGTCCTCTGCTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... tcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgcaaatgtgtactgacttctgattaatcgtgtggtgaatattcttctgtagAATTTATCCCAAGCAAGAGCTAGTGGTAGGAGATTTGCCACCTCAGAAACTGAGCCTTTACCGAACTCAGAATCACAGAATCCCCGAAGGCATTCTTCCT
                                          tattcttct  CT-rich tract
                                        aatattctt  TA-rich tract