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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtctgataggcaaaatgggctcaagaagcaatataaattcctattcctgtcttttcttttttcttcttttcactgatatgaatttttgttttaatgtagCTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTG

Basic information

species Glycine max
transcript GLYMA10G43810.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43810.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 3'ss of exon 4
---agtctgataggcaaaatgggctcaagaagcaatataaattcctattcctgtcttttcttttttcttcttttcactgatatgaatttttgttttaatgtagCTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTG
     | |  | |    ||  ||   |  |    ||||||||  ||   |  |  |      || |  | | || | ||||    ||| || ||  | || |||||| ||  |||| |  ||||||||||||||||||||||||||||| | |||||||||| | ||||| || ||| | |||||||| |
ctttatatctttgatttaactggaatattataatatataaataactg--caaggttaacaggttcttctttgttgagtgatcattattgtt-ttcaactgcagCTATCCCACTGTCCACTGATCACAAACCTGATAGATCTGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315402|gb|FK009204.1|FK009204
EST:     TGTTGCAAATGTTGGTGATTCCAGAGTGGTTGCATCTAGAGCTGGTTCAG                         CTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAA
genomic: TGTTGCAAATGTTGGTGATTCCAGAGTGGTTGCATCTAGAGCTGGTTCAGgttgatgtca ... tttaatgtagCTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAA
EST: gi|208150017|gb|GD951633.1|GD951633
EST:     TGTTGCAAATGTTGGTGATTCCAGAGTGGTTGCATCTAGAGCTGGTTCAG                         CTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAA
genomic: TGTTGCAAATGTTGGTGATTCCAGAGTGGTTGCATCTAGAGCTGGTTCAGgttgatgtca ... tttaatgtagCTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtcttttcttttttcttcttttcactgatatgaatttttgttttaatgtagCTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTG
                                            ttttaat  putative branch site (score: 3)
                                      tttttgtttt  CT-rich tract
                               atatgaatttttgttt  TA-rich tract