1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aggattcaatagcaaataattttgtcactgttaggtttagctattctgctagtaccattatcaatggaagtttattcacctttttttaactattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTACTGGAGAG
species | Glycine max |
transcript | GLYMA10G42940.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|120533425|gb|EH261558.1|EH261558
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|19053577|gb|BM732244.1|BM732244
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|213596831|gb|DB964094.1|DB964094
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|208145241|gb|GD941760.1|GD941760
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: GAAAAGGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCGATTTEST: gi|13478635|gb|BG508033.1|BG508033
genomic: GAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTEST: gi|213615425|gb|DB965511.1|DB965511
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
EST: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAG GTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAAGCTGTTGTTCAGgttagagact ... tattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTT
ctgctagtaccattatcaatggaagtttattcacctttttttaactattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTACTGGAGAG
ttttaac putative branch site (score: 2)
tttttttaactattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggattcaatagcaaataattttgtcactgttaggtttagctattctgctagtaccattatcaatggaagtttattcacctttttttaactattgaccagGTATTTGAAGGTACATCTGGAATCGACAATAAATTTACGACTGTGCAATTTACTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - tgtcact
- - - - - - - - - - - - - - - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgga