1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttttgcatggagaaatttgttctggaatataaagccttcccttgatttggaaacctcttgttcagtggcttcatgtttcatcttctttccttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAAGAAAATTGATCGCGGAGTTCGTC
species | Glycine max |
transcript | GLYMA10G42910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGT GGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAGEST: gi|11273785|gb|BF324180.1|BF324180
genomic: ACCTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGTgtaagataca ... cttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAG
EST: ACCTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGT GGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAGEST: gi|11413946|gb|BF426021.1|BF426021
genomic: ACCTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGTgtaagataca ... cttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAG
EST: ACCTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGT GGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAGEST: gi|208187507|gb|GD985537.1|GD985537
genomic: ACCTCAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGTgtaagataca ... cttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAG
EST: AACAGTCCCCGCAGT GGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAG
genomic: AACAGTCCCCGCAGTgtaagataca ... cttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAG
atttggaaacctcttgttcagtggcttcatgtttcatcttctttccttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAAGAAAATTGATCGCGGAGTTCGTC
ccttgat putative branch site (score: 5)
cttcatgtttcatctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgcatggagaaatttgttctggaatataaagccttcccttgatttggaaacctcttgttcagtggcttcatgtttcatcttctttccttctttcagGGAAGCGCTAGGAGGCTGGTAAAAGCTGCGCTTCAAGAAGCTGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAAGAAAATTGATCGCGGAGTTCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -gcatgga
- - - - - - - - - -gttctgg
- - - - - - - - - - - - - - - - - - cttccct
- - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagtg