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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaataaaaatctcaccgattgattattgcctaatgtgttttcactgcttcattagagccttttagtctttacagatttatttgatgttcatattgtcagAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCT

Basic information

species Glycine max
transcript GLYMA10G42580.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42580.4 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0147g00220.t01 (Vitis vinifera), 3'ss of exon 4
gaaataaaaatctcaccgattgattattg----cctaatgt---gttttcactgcttcattagagccttttagtctttacagatttatttgatgttcatattgtcagAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCT
     || | |  ||    || | ||||     ||   |||    | ||  ||| ||  || |    | | |  ||||||| |   || |  || | |   ||  || ||   ||| |||||||||||||||||||| ||||||||||||||||||||||| || || ||||| || ||||| |||||||| 
-----aatatttgcattagttaagtattttaatccagttgttcaatctttcctgtttttttgggtgttatcatcctttacaaaacaatgt--tgattaatatgctagTGA---TGGACGCAAAGTTGAAGATCCTGACATGTTAGAGAGAATTCGACTTACAATCATCAACAACCTTTTGAAGTATCATCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttcattagagccttttagtctttacagatttatttgatgttcatattgtcagAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCT
                                  atttgat  putative branch site (score: 5)
                       tttacagatttattt  TA-rich tract