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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttggcatttaaactgtaatcctaaataattgctgaagaccattgattgtaggggaaaaaaaaggtgttattccttatataaaactctacgttatgcagGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTG

Basic information

species Glycine max
transcript GLYMA10G40730.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322400|gb|GR837814.1|GR837814
EST:     TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAA                         GCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
genomic: TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAgtaggtcccc ... cgttatgcagGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
EST: gi|22928588|gb|BU545727.1|BU545727
EST:     TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAA                         GCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
genomic: TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAgtaggtcccc ... cgttatgcagGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
EST: gi|10846334|gb|BF069252.1|BF069252
EST:     TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAA                         GCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
genomic: TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAgtaggtcccc ... cgttatgcagGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
EST: gi|27423492|gb|CA935012.1|CA935012
EST:     TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAA                         GCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC
genomic: TGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAgtaggtcccc ... cgttatgcagGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtaggggaaaaaaaaggtgttattccttatataaaactctacgttatgcagGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTG
 cattgat  putative branch site (score: 4)
                       ttattccttatataaa  TA-rich tract