1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtaaaaatattttttgatagatccttttttttcccttatagttgaatactagttaaacttaattttcatttatattaacttgatttgagttgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATACTTACTACTCTAAATTTTGAACTCAATGTGCAACATCCATATGTACCTC
species | Glycine max |
transcript | GLYMA10G39550.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTATATAAACAAGATTTTGCTTTGTTATCCTACCGGTTTCCTGTT GATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATA
genomic: AAATTTTATATAAACAAGATTTTGCTTTGTTATCCTACCGGTTTCCTGTTgtgagtatag ... tgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATA
atactagttaaacttaattttcatttatattaacttgatttgagttgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATACTTACTACTCTAAATTTTGAACTCAATGTGCAACATCCATATGTACCTC
ttgtttc CT-rich tract
agttaaacttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaatattttttgatagatccttttttttcccttatagttgaatactagttaaacttaattttcatttatattaacttgatttgagttgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATACTTACTACTCTAAATTTTGAACTCAATGTGCAACATCCATATGTACCTC
- aaaaata
- - - - - - - - - - - - - - - ttccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg