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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaaaatattttttgatagatccttttttttcccttatagttgaatactagttaaacttaattttcatttatattaacttgatttgagttgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATACTTACTACTCTAAATTTTGAACTCAATGTGCAACATCCATATGTACCTC

Basic information

species Glycine max
transcript GLYMA10G39550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39550.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaaatattttttgatagatccttttttttccc-ttatagttgaa--tactagttaaacttaattttcatttatattaacttgatttgagttgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATACTTACTACTCTAAATTTTGAACTCAATGTGCAACATCCATATGTACCTC
  | |   ||        ||||  ||   ||     ||     | ||  |  |||||    || ||  |    | |  | || |||||||  | |||  |||||| |||||||| ||||||||||| |||||| |||||||||| ||  ||||||| ||||||||| ||||||| |||| |||| | ||||||||||| ||||
--atatgcatccgaatccagattgttggcttaaaagttgggactaaagctcttagtttgtgttcatagtgtgctttcatgacatgatttggat-gttgaacagGACTGGTTTGAGCAGTATCGGGAACGGGTGATTGAGGCTGAGCAGATGATACTGACTACTCTAGATTTTGAGCTCACTGTGGAGCATCCATATGTTCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933379|gb|BU550518.1|BU550518
EST:     TATAAACAAGATTTTGCTTTGTTATCCTACCGGTTTCCTGTT                         GATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATA
genomic: TATAAACAAGATTTTGCTTTGTTATCCTACCGGTTTCCTGTTgtgagtatag ... tgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactagttaaacttaattttcatttatattaacttgatttgagttgtttcacagGATTGGTTTGAACAGTATCGGGAGCGGGTGCTTGAGGCTGAACAACTGATACTTACTACTCTAAATTTTGAACTCAATGTGCAACATCCATATGTACCTC
                                            ttgtttc  CT-rich tract
     agttaaacttaatttt  TA-rich tract