Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatataataactagaagaaattagtggttacagagtatgttgtgttttcttatataatattccatgtagtaattaaaattacacctttatcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGATTTGAAGGAGTTGGTCCGGAAGTTTATTCCTGAGATTATTGGAAAAGAGA

Basic information

species Glycine max
transcript GLYMA10G39050.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163724|gb|HO012457.1|HO012457
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGA
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGA
EST: gi|207769908|gb|GD742222.1|GD742222
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|254327082|gb|GR836691.1|GR836691
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|11687977|gb|BF595653.1|BF595653
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|209713365|gb|BW653862.1|BW653862
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193435470|gb|FK402392.1|FK402392
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|4296137|gb|AI442432.1|AI442432
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGAACATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|209715748|gb|BW674384.1|BW674384
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|207697230|gb|GD679017.1|GD679017
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATG
EST: gi|15815377|gb|BI787652.1|BI787652
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193359310|gb|FK327531.1|FK327531
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|17400604|gb|BM177386.1|BM177386
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAAGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193566661|gb|FK525994.1|FK525994
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|17519736|gb|BM188778.1|BM188778
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|207809288|gb|GD782258.1|GD782258
EST:     TTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: TTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208053538|gb|GD850539.1|GD850539
EST:     TAACCTAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: TAACC-AGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193695586|gb|FK633876.1|FK633876
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGT-GGA-GNTGAGGGAGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGAT
EST: gi|193344050|gb|FK311964.1|FK311964
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193650655|gb|FK599866.1|FK599866
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAG
EST: gi|207810252|gb|GD781082.1|GD781082
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|31474713|gb|CD416741.1|CD416741
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|209715373|gb|BW682104.1|BW682104
EST:     TCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: TCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|24137050|gb|BU927560.1|BU927560
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|207815985|gb|GD788310.1|GD788310
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATG
EST: gi|7286160|gb|AW598647.1|AW598647
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208058481|gb|GD860598.1|GD860598
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|58020331|gb|CX707073.1|CX707073
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|6747622|gb|AW318135.1|AW318135
EST:     CTAACCATGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTATGAAGATGAGGGAGATCATGACCAACCAGACAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193424302|gb|FK386847.1|FK386847
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193339278|gb|FK305255.1|FK305255
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAAGGGAAGATCATGA
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGA-GGGA-GATCATGA
EST: gi|208324786|gb|GE123106.1|GE123106
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAAACCAGGCAACAGCATGTGA
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAA-CCAGGCAACAGCATGTGA
EST: gi|193436892|gb|FK402521.1|FK402521
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|7925465|gb|AW831491.1|AW831491
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACCATCCAGCCAGATTAGACAG                         ATTTCG-AGGAAGATGAAGGAGATCATGACCACCCAG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATT-CGTAGGAAGATGAGGGAGATCATGACCAACCAG
EST: gi|213597799|gb|DB960356.1|DB960356
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCAT
EST: gi|207756942|gb|GD728052.1|GD728052
EST:     AACCTGTTATGCTACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: AACCTGTTATGC-ACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208245999|gb|GE045613.1|GE045613
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193541893|gb|FK496663.1|FK496663
EST:     TGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACTAGCATGTGA
genomic: TGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAAC-AGCATGTGA
EST: gi|41145655|gb|CK605866.1|CK605866
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193400040|gb|FK367009.1|FK367009
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGAACCAAACCAGGCAACAGC
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGA-CCAA-CCAGGCAACAGC
EST: gi|193428204|gb|FK397170.1|FK397170
EST:     TAACCTAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: TAACC-AGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|41145968|gb|CK606179.1|CK606179
EST:     CCAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193405218|gb|FK371699.1|FK371699
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTG
EST: gi|208295981|gb|GE092231.1|GE092231
EST:     TAACCAGGTTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: TAACCAGG-TGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208234543|gb|GE030492.1|GE030492
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193620700|gb|FK571364.1|FK571364
EST:     GCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: GCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|209715372|gb|BW682103.1|BW682103
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|17964737|gb|BM271467.1|BM271467
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|6567096|gb|AW234723.1|AW234723
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|207847823|gb|GD818330.1|GD818330
EST:     TATGTACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: TATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGA-
EST: gi|192324381|gb|FK015732.1|FK015732
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193546325|gb|FK500010.1|FK500010
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|18040054|gb|BM308348.1|BM308348
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|192296512|gb|FG989833.1|FG989833
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|21676815|gb|BQ629166.1|BQ629166
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208247521|gb|GE045819.1|GE045819
EST:     CTAACCAGGTGAAGAAAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193425694|gb|FK387363.1|FK387363
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193433020|gb|FK398696.1|FK398696
EST:     CTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208205294|gb|GE005285.1|GE005285
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|192324800|gb|FK016541.1|FK016541
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|151407517|gb|EV277332.1|EV277332
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208296161|gb|GE096149.1|GE096149
EST:     GTTATGCACAATCAAGTCCTAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: GTTATGCACAATCAAG-CC-AGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193576166|gb|FK530351.1|FK530351
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGNT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|151412994|gb|EV282802.1|EV282802
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAATATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193569425|gb|FK527184.1|FK527184
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAG
EST: gi|7684904|gb|AW755552.1|AW755552
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|208327190|gb|GE118044.1|GE118044
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|31466552|gb|CD408580.1|CD408580
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|298189408|gb|HO037811.1|HO037811
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAAC
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAAC
EST: gi|31457964|gb|CD399992.1|CD399992
EST:     CAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193530049|gb|FK486122.1|FK486122
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAG
EST: gi|193316915|gb|FK280363.1|FK280363
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGGAGGGAGATCATGACCAACCAGGCAACAGCATGTGA
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATG-AGGGAGATCATGACCAACCAGGCAACAGCATGTGA
EST: gi|208294373|gb|GE093058.1|GE093058
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193732078|gb|FK664896.1|FK664896
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCAT
EST: gi|298180158|gb|HO025373.1|HO025373
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATG
EST: gi|193345979|gb|FK310465.1|FK310465
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCTAACAGCATGTGA
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGC-AACAGCATGTGA
EST: gi|58020181|gb|CX706923.1|CX706923
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
EST: gi|193728879|gb|FK665589.1|FK665589
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAG
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAG
EST: gi|298182208|gb|HO026383.1|HO026383
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT
genomic: CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGgtatatactc ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcttatataatattccatgtagtaattaaaattacacctttatcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGATTTGAAGGAGTTGGTCCGGAAGTTTATTCCTGAGATTATTGGAAAAGAGA
                                      cacctttatcttttc  CT-rich tract
      ttatataatattccat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatatataataactagaagaaattagtggttacagagtatgttgtgttttcttatataatattccatgtagtaattaaaattacacctttatcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACAGCATGTGATTTGAAGGAGTTGGTCCGGAAGTTTATTCCTGAGATTATTGGAAAAGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - agaagaaa
- - - - - - - - - - - - agtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacctt