Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatatatcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC

Basic information

species Glycine max
transcript GLYMA10G38940.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38940.3 (Glycine max), 3'ss of exon 4
lower sequence: AT4G14716.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatat-atcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC
|||  ||||  | || | ||       | ||| || |  | |||          |  ||| |  |  | | ||  | || |     ||| || |||||||| || ||| | ||||| ||||||||| | || | ||| ||||| ||||| |||||  ||||||||||||| || ||||||||||| ||
gtaagaact--tcttttact---ggcggctttactcgtaaacttaaaatttcgatatagtagtcatgttttattttcttgggaaaaagGTTACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGGATCTATCATCGCTTCAC

upper sequence: GLYMA10G38940.3 (Glycine max), 3'ss of exon 4
lower sequence: AT2G26400.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatatatcct----gtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC
     |  || |||| | |  | ||||  |  |      |  | |  ||   || | | ||  |  || | | ||              ||| || |||||||| ||||||  |||||||  ||||||| |||| ||||| ||||| |||||  ||||  |||| ||||||||||| ||||||||||| ||
---gtaggtacttttattcgctgctttagtacttaaataaattcga-tatggtgctcatttattttattttttcttaaaaacaaatcaaagGATACTTTGATGTGAGGGATCTCAATGATATTTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCTTCCCTGCTGGAATATATCATCGCTTCAC

upper sequence: GLYMA10G38940.3 (Glycine max), 3'ss of exon 4
lower sequence: AT4G14710.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatatatcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC
     || || |||| |    | ||||  ||   ||    |  |  |||   | | ||  |   |         |  |||     ||| || |||||||| |||||| ||||||| ||||||||| |||| ||||| ||||| ||||| |||||  |||||||||||||||| ||||||||||| ||
---gtaagtacttttattggctgctttacttgatttaagtcggtatctatattctcaacgtttca-------ttttcttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCAC

upper sequence: GLYMA10G38940.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 4
gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatatatcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC
    |   | | || | | |||    |  |||  || ||||  | ||||  |    | | |    ||| | | || | ||  |  ||| ||||||||||| ||||||   |||||  ||||||| || |||||| | |||||||||||||||||  | |||||||||||||||||||| || || ||
--gtaggatgagttgcagttttgtagtt-tttagttcccactctacctattaacccaggctttctaatttttactttatgg-tgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525505|gb|BU084316.1|BU084316
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|13252055|gb|BG362958.1|BG362958
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|254329556|gb|GR839109.1|GR839109
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|120493118|gb|EH221285.1|EH221285
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|19270789|gb|BM887045.1|BM887045
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|6724539|gb|AW308938.1|AW308938
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|9819664|gb|BE555177.1|BE555177
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATNTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|13482036|gb|BG511379.1|BG511379
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|15813895|gb|BI786170.1|BI786170
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|22522682|gb|BU081493.1|BU081493
EST:     ATAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|14258511|gb|BG881419.1|BG881419
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|8826939|gb|BE210669.1|BE210669
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GCTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTG
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTG
EST: gi|254315800|gb|GR825609.1|GR825609
EST:     GAACATCTTCACACTGATGAGGAGATCCGCTTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: GAACATCTTCACACTGATGAGGAGATCCGCTTTT-GTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|208122931|gb|GD923665.1|GD923665
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCG
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCG
EST: gi|209708652|gb|BW678829.1|BW678829
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|213604889|gb|DB960570.1|DB960570
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|13481853|gb|BG511196.1|BG511196
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|6501990|gb|AW203363.1|AW203363
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|298186912|gb|HO034011.1|HO034011
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTCGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|192318385|gb|FK006505.1|FK006505
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTTA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|7591166|gb|AW706904.1|AW706904
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|298174446|gb|HO014591.1|HO014591
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|7042440|gb|AW472334.1|AW472334
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|7041921|gb|AW471815.1|AW471815
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|298167016|gb|HO010455.1|HO010455
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|9902326|gb|BE611294.1|BE611294
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTATTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATCGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|10844547|gb|BF067878.1|BF067878
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|27426192|gb|CA937712.1|CA937712
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|298170925|gb|HO015901.1|HO015901
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|254339056|gb|GR847773.1|GR847773
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|207839806|gb|GD810895.1|GD810895
EST:     GAACATCTTCACACTGATGAGGAGATCCGCTTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTTAGGG
genomic: GAACATCTTCACACTGATGAGGAGATCCGCTTTT-GTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTT-AGGG
EST: gi|298194017|gb|HO040665.1|HO040665
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|298198070|gb|HO039609.1|HO039609
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|207798267|gb|GD769503.1|GD769503
EST:     AGAACATCTTCACACTGTTGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|298184067|gb|HO029280.1|HO029280
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCCTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|13312690|gb|BG406341.1|BG406341
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|7283509|gb|AW596116.1|AW596116
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTNTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|15285900|gb|BI469791.1|BI469791
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|6455203|gb|AW185886.1|AW185886
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCTAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|193433224|gb|FK393916.1|FK393916
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|4437017|gb|AI522882.1|AI522882
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         NGTATTNTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|208195023|gb|GD992128.1|GD992128
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATT
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATT
EST: gi|120497212|gb|EH225379.1|EH225379
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|23726129|gb|BU761046.1|BU761046
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
EST: gi|11273900|gb|BF324289.1|BF324289
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGGTATTT-GATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTC
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGG-TATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTC
EST: gi|8282521|gb|BE020012.1|BE020012
EST:     AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTG                         GGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA
genomic: AGAACATCTTCACACTGATGAGGAGATCCGCTTTTGTGCTGCTGGAAGTGgtacaaacta ... ttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgccaccttgcctaccatgttaagttgctaaatatatcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC
                            tgctaaa  putative branch site (score: 2)
                                       tcctgtttgtcttt  putative PPT
                               taaatatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatatatcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA