1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaaaattgatgtaaatgttgaactattattgagtgtaaattttaatcaatgcaagacaagcattgtaatgcctgtgtcatatttctctaatttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGACAGCATCAGTGGCAGATTTTCAGTGGAGTCAGAATTTCAAGGAACCTC
species | Glycine max |
transcript | GLYMA10G38820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACAGCAGCCATATTCCCTTGATTGCATTCCTGTTGAAGCAGAATATCAG AAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGEST: gi|14011814|gb|BG726736.1|BG726736
genomic: TACAGCAGCCATATTCCCTTGATTGCATTCCTGTTGAAGCAGAATATCAGgttggcttaa ... atttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTG
EST: TACAGCAGCCATATTCCCTTGATTGCATTCCTGTTGAAGCAGAATATCAG AAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGEST: gi|254320596|gb|GR827045.1|GR827045
genomic: TACAGCAGCCATATTCCCTTGATTGCATTCCTGTTGAAGCAGAATATCAGgttggcttaa ... atttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTG
EST: TACAGCAGCCATATTCCCTTGATTGCATTCCTGTTGAAGCAGAATATCAG AAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGEST: gi|9900878|gb|BE609846.1|BE609846
genomic: TACAGCAGCCATATTCCCTTGATTGCATTCCTGTTGAAGCAGAATATCAGgttggcttaa ... atttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTG
EST: TCCTGTTGAAGCATAATATCAG AAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTG
genomic: TCCTGTTGAAGCAGAATATCAGgttggcttaa ... atttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTG
atcaatgcaagacaagcattgtaatgcctgtgtcatatttctctaatttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGACAGCATCAGTGGCAGATTTTCAGTGGAGTCAGAATTTCAAGGAACCTC
ctctaat putative branch site (score: 3)
atatttctctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaattgatgtaaatgttgaactattattgagtgtaaattttaatcaatgcaagacaagcattgtaatgcctgtgtcatatttctctaatttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGACAGCATCAGTGGCAGATTTTCAGTGGAGTCAGAATTTCAAGGAACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -tgatgta
- - - - - - - - tgttgaa
- - - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcct