1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctgttactttttttcttcccacccccttatttcatttgatgttttgctttactctggctgggttgctatcctaacttggtcattttctatgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAG
species | Glycine max |
transcript | GLYMA10G38750.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGEST: gi|31475667|gb|CD417695.1|CD417695
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
EST: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGEST: gi|192330115|gb|FK019770.1|FK019770
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
EST: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT GTATCCTCATTGCTTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
tgctttactctggctgggttgctatcctaacttggtcattttctatgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAG
tcctaac putative branch site (score: 1)
ttttctat putative PPT
attttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgttactttttttcttcccacccccttatttcatttgatgttttgctttactctggctgggttgctatcctaacttggtcattttctatgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAG
-ctgttac
- - - - - - -ttcttcc
- - - - - - - - - - caccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatc