1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtattgagtattcattcctttgaatgttctcgtttctttaataaaataatgcttgtggttgtgacttgtgatatgatttcagagaattacattttatttttcctttatcacattattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGATCAC
species | Glycine max |
transcript | GLYMA10G38720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGG TGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTEST: gi|12691387|gb|BG157723.1|BG157723
genomic: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGgtcagtattg ... tattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATT
EST: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGG TG-AAGTGCTGTGATATTCATGTANAAGAATTTGATGAGTTTATGAGCATTEST: gi|163918167|gb|EH039064.1|EH039064
genomic: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGgtcagtattg ... tattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATT
EST: GACCGGATGAGAGGG TGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTEST: gi|192297706|gb|FG989596.1|FG989596
genomic: GACCGGATGAGAGGGgtcagtattg ... tattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATT
EST: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGG TGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTEST: gi|151397809|gb|EV267682.1|EV267682
genomic: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGgtcagtattg ... tattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATT
EST: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGG TGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTEST: gi|192323948|gb|FK015684.1|FK015684
genomic: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGgtcagtattg ... tattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATT
EST: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGG GEST: gi|192323948|gb|FK015684.1|FK015684
genomic: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGgtcagtattg ... tattttgcag-
EST: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGG G
genomic: CTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGgtcagtattg ... tattttgcag-
tgatatgatttcagagaattacattttatttttcctttatcacattattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGATCAC
ttatttt CT-rich tract
aattacattttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtattgagtattcattcctttgaatgttctcgtttctttaataaaataatgcttgtggttgtgacttgtgatatgatttcagagaattacattttatttttcctttatcacattattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG