1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctagattaaagactagcctctgaagttataaatgtgacattagactttgtattttgacatgtgcgaagtgtttgttaatcatcaattcattcttcattagGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATG
species | Glycine max |
transcript | GLYMA10G38370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAG GCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAEST: gi|8404350|gb|BE059984.1|BE059984
genomic: TTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGgtttgatttc ... tcttcattagGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTA
EST: TTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAG GCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTA
genomic: TTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGgtttgatttc ... tcttcattagGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTA
tttgtattttgacatgtgcgaagtgtttgttaatcatcaattcattcttcattagGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATG
tgttaat putative branch site (score: 3)
ttcattcttc putative PPT
tttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagattaaagactagcctctgaagttataaatgtgacattagactttgtattttgacatgtgcgaagtgtttgttaatcatcaattcattcttcattagGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - -ctctgaa
- - - - - - - - - - - - - - - - - - - - - gactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattca