1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttgcaagtttatagtctgtcatgaatccatgaacttctctacttcgataaaaaaaaaatagatgttaaaatcactgaaattcatttgtttaatggcagGTTATCGACTGCATTGGTGATGCTATTTCGGGGTGAGAAAGGGTATGACCACTGCCATTGGTGTCGCTACTTAACATGTGTCCCTACTTCTAAATGGGAA
species | Glycine max |
transcript | GLYMA10G38290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCACCAATATGTGCTAGGGGTTGTGTCTCTTATTCTGTTGATTGCAGG GTTATCGACTGCATTGGTGATGCTATTTCTGGGTGAGAAAGGGTATGACCAEST: gi|208257677|gb|GE053746.1|GE053746
genomic: ACTCACCAATATGTTCTAGGGGTTGTGTCTCTTATTCTGTTGATTGCAGGgttagttcct ... ttaatggcagGTTATCGACTGCATTGGTGATGCTATTTCGGGGTGAGAAAGGGTATGACCA
EST: TTGTGTCTCTTATTCTGTTGATTGCAGG GTTATCGACTGCATTGGTGATGCTATTTCGGGGTGAGAAAGGGTATGACCA
genomic: TTGTGTCTCTTATTCTGTTGATTGCAGGgttagttcct ... ttaatggcagGTTATCGACTGCATTGGTGATGCTATTTCGGGGTGAGAAAGGGTATGACCA
tcgataaaaaaaaaatagatgttaaaatcactgaaattcatttgtttaatggcagGTTATCGACTGCATTGGTGATGCTATTTCGGGGTGAGAAAGGGTATGACCACTGCCATTGGTGTCGCTACTTAACATGTGTCCCTACTTCTAAATGGGAA
gtttaat putative branch site (score: 4)
tttgttt CT-rich tract
aaaaaaaaaatagatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgcaagtttatagtctgtcatgaatccatgaacttctctacttcgataaaaaaaaaatagatgttaaaatcactgaaattcatttgtttaatggcagGTTATCGACTGCATTGGTGATGCTATTTCGGGGTGAGAAAGGGTATGACCACTGCCATTGGTGTCGCTACTTAACATGTGTCCCTACTTCTAAATGGGAA
- -tgcaagt
- - - - - - - - - - -catgaat
- - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa