1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcttagtacaattgtagccaaaaaaatatattagtacaacgtccttgcattatattgccctgtttgttcctaaaattaatgattttctccatcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAACAAGGGCATATACGAGTTGGTCCAGAG
species | Glycine max |
transcript | GLYMA10G37720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGEST: gi|151407029|gb|EV276844.1|EV276844
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCG
EST: AGGCAAAGTATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193720055|gb|FK653939.1|FK653939
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAA-TTTGCTGAGCACTTGAAEST: gi|193421658|gb|FK386219.1|FK386219
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGACTGAGCACTEST: gi|208081615|gb|GD879945.1|GD879945
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTG-CTGAGCACT
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGEST: gi|207711447|gb|GD693601.1|GD693601
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTG
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACCTGAAEST: gi|208136558|gb|GD934156.1|GD934156
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGEST: gi|193423349|gb|FK390626.1|FK390626
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAG
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193678476|gb|FK618866.1|FK618866
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGEST: gi|208149676|gb|GD947680.1|GD947680
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTG
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|208229560|gb|GE022964.1|GE022964
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAA-GCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193420490|gb|FK390483.1|FK390483
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTEST: gi|208075944|gb|GD873375.1|GD873375
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACT
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193374303|gb|FK342083.1|FK342083
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193327736|gb|FK295493.1|FK295493
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAGAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGCGCGACTAAAATTTGCTGEST: gi|193323889|gb|FK290069.1|FK290069
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTG
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGGGCACTTGAAEST: gi|208116415|gb|GD914502.1|GD914502
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGEST: gi|207731699|gb|GD708040.1|GD708040
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAG
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAAEST: gi|57574334|gb|CX547309.1|CX547309
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|192295691|gb|FG990545.1|FG990545
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|207700526|gb|GD683633.1|GD683633
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|208271655|gb|GE069655.1|GE069655
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: GGTCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|208263353|gb|GE061065.1|GE061065
genomic: GG-CAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTCAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTATTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193651789|gb|FK595534.1|FK595534
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|193392005|gb|FK353362.1|FK353362
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|207777260|gb|GD750441.1|GD750441
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAA-GCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAEST: gi|58014941|gb|CX701683.1|CX701683
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
EST: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAG GCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
genomic: AGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGgtaaaaataa ... catcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAA
ttgcattatattgccctgtttgttcctaaaattaatgattttctccatcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAACAAGGGCATATACGAGTTGGTCCAGAG
ttttctccatc CT-rich tract
taaaattaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttagtacaattgtagccaaaaaaatatattagtacaacgtccttgcattatattgccctgtttgttcctaaaattaatgattttctccatcatgcagGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAACAAGGGCATATACGAGTTGGTCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaattaa