1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aacttcatgattatgtcttgacctttggaaagaaatatgtgaacatatgtcatatttgactatgaactgatgtgtttgattgaaatattatgttgaacagAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTGCTACAAAAGCTGTTGAGGCAGAGAATGATCTTCCAGAGCCACCTACAGT
species | Glycine max |
transcript | GLYMA10G37440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTCTAAATTTACTGATTTGATCAAAGACTGCGATGAACTGATTGCAG AAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTGEST: gi|151404312|gb|EV274122.1|EV274122
genomic: AGATTCTAAATTTACTGATTTGATCAAAGACTGCGATGAACTGATTGCAGgtaaacattt ... tgttgaacagAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTG
EST: AGATTCTAAATTTACTGATTTGATCAAAGACTGCGATGAACTGATTGCAG AAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACGACACAGGGTGCTGEST: gi|13481891|gb|BG511234.1|BG511234
genomic: AGATTCTAAATTTACTGATTTGATCAAAGACTGCGATGAACTGATTGCAGgtaaacattt ... tgttgaacagAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTG
EST: ATGAACTGATTGCAG AAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTG
genomic: ATGAACTGATTGCAGgtaaacattt ... tgttgaacagAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTG
tatgtcatatttgactatgaactgatgtgtttgattgaaatattatgttgaacagAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTGCTACAAAAGCTGTTGAGGCAGAGAATGATCTTCCAGAGCCACCTACAGT
tttgattgaaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttcatgattatgtcttgacctttggaaagaaatatgtgaacatatgtcatatttgactatgaactgatgtgtttgattgaaatattatgttgaacagAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTGCTACAAAAGCTGTTGAGGCAGAGAATGATCTTCCAGAGCCACCTACAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -ttcatga
- - - - - - -tgtcttg
- - - - - - - - - - acctttg
- - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - -tgtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg