1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cacccagtatgtaggaattgaactcagtggttaatgatttttcacataattatgtacccaaatttcatagttttgctgatattgtgattggatggtgcagGTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGTTTTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACTTCGTGGCAAGAG
species | Glycine max |
transcript | GLYMA10G37100.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAG GTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGTEST: gi|207691647|gb|GD674286.1|GD674286
genomic: GGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggtgcagGTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGT
EST: GGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAG GTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGT
genomic: GGATTTTGCAAATCCGGCCTGTGCCGCTACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggtgcagGTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGT
ataattatgtacccaaatttcatagttttgctgatattgtgattggatggtgcagGTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGTTTTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACTTCGTGGCAAGAG
tgctgat putative branch site (score: 3)
aaatttcatagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacccagtatgtaggaattgaactcagtggttaatgatttttcacataattatgtacccaaatttcatagttttgctgatattgtgattggatggtgcagGTTATAAAGTTGATGAACTGAATCCCGAGTCTAGTCACTTGCGGCTTCAGTTTTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACTTCGTGGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
cacccag
- - - -tatgtag
- - - - - - - - - - - - -agtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgattg