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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttggttattgtacaatatattgatattggttatttgggtagcatcttgttggcaatagattgaattgaatttctatcttgttattgttgtcttgtactgtgtttctcctatgatatccttatctgctgaatcaagtcttgtccaatgaacagGTTGTTACAAAATCACTTCAAGGTCTTTCCATTGAATCTGCCTTGGATCTGCAAAAAGTTCTTAGAGTTGAAACATGCACATCACAAACAACTGCTTTGC

Basic information

species Glycine max
transcript GLYMA10G37000.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541168|gb|BU091011.1|BU091011
EST:     GCATTTCCGAGAATGACATTCAGCGTTTTGAAGGGATTTCAGAAGTTGAG                         GTTGTTACAAAATCACTTCAAGGTCTTTCCATTGAATCTGCCTTGGATCTG
genomic: GCATTTCCGAGAATGACATTCAGCGTTTTGAAGGGATTTCAGAAGTTGAGgtaccttggt ... caatgaacagGTTGTTACAAAATCACTTCAAGGTCTTTCCATTGAATCTGCCTTGGATCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtttctcctatgatatccttatctgctgaatcaagtcttgtccaatgaacagGTTGTTACAAAATCACTTCAAGGTCTTTCCATTGAATCTGCCTTGGATCTGCAAAAAGTTCTTAGAGTTGAAACATGCACATCACAAACAACTGCTTTGC
                                      tcttgtcc  CT-rich tract
           tatgatat  TA-rich tract