Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgttcttttaattccaaattaagagtcacttccaattatcacaaattatcatgattgagatttattcctaatagtctgtctgccttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT

Basic information

species Glycine max
transcript GLYMA10G36780.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 4
----------ttatgttctttta--attccaaattaagagtcact---tccaattatcacaa--attatcatg-attg-agatttattcctaatagtctgtctg---ccttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT
          |  |||| |||||  ||     |||  ||| |  |   | || |||     |   | | ||||   || | |||  ||  | ||  ||  |||    | ||   |  | ||||| ||||||||||| || |||||||||||||| || ||  ||||||| || ||| | ||||||||||  |||||  | |||||||||| || |||||  |
gtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGTACCATTGCCGATAAGGTGGACTATGGATACAAGT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G109677_T04 (Zea mays), 3'ss of exon 5
---ttatgttcttttaattccaaattaagagtcacttccaattatcacaaattatcatgattgagatttattcctaatagtctgtc-tgc-cttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT
   | | || |   ||  |   |  |||  |  |     | | || |    || | | |    || | |   |  | |   || |  ||   ||| |||||  |||| ||||| ||||| || |||||||||||||| || ||  | ||||| |||||||| ||||||||||  |||||  | |||||||||| ||  ||||  |
gagtgaagtacacctatctttcatataattgaaa-----agtgattattttttctgaggcactaggtattagcaaactcacctcttatgtatttgtatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTATGGCTACAAAT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G324314_T05 (Zea mays), 3'ss of exon 4
---ttatgttcttttaattccaaattaagagtcacttccaattatcacaaattatcatg-attgagatttattcctaatagtctgtctgc-cttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT
   | | || |   ||  |   |  |||  |  |     | | || |    || | | | | |  |  |||        |   | | ||   ||| || ||  |||| ||||| ||||| || |||||||||||||| || ||  | ||||| |||||||| ||||||||||  |||||  | |||||||||| ||  ||||  |
gagtgaagtacacctatctttcatataattgaaa-----agtgattattttttctgaggcactaggtattagcaaactcaccttttatgtatttgtatattttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTATGGCTACAAAT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G801409_T04 (Zea mays), 3'ss of exon 3
ttatgttcttttaattccaaattaagagtcacttccaattatcacaaattatcatgattgagatttattcctaatagtctgtc-tgc-cttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT
 |   |||   | || |||||    | || | |   || |        || | | |    || | |   |  | |   || |  ||   ||| |||||  |||| ||||| ||||| || |||||||||||||| || ||  | ||||| |||||||| ||||||||||  |||||  | |||||||||| ||  ||||  |
-tcaattccagtgat-ccaaacggggcgtaattgaaaagtgattatttttctgaggcactaggtattagcaaactcacctcttatgtatttgtatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTATGGCTACAAAT

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G135727_T03 (Zea mays), 3'ss of exon 4
-----ttatgttcttttaattccaaattaagagtcacttccaattatcacaaattatcatgattgagatttattcctaatagtctgtctgccttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT
      || |    | |       |||| | | |   ||    || |    |   |  | |  | ||     |  |   |  | ||| |  |||   ||||  |||| ||||| ||||| || |||||||||||||| || ||  | ||||| |||||||| ||||||||||  |||||  | ||||||||||  |  || |  |
gggaagtaggcctatctttcatataattgaaaattgatttt--tttttctgaggcactaggtattagccaactctcacctcttgtgtatttctt---tcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTACGGCTATAAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185869|gb|HO031030.1|HO031030
EST:     AGAAACTGAAGAGGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209718971|gb|BW674811.1|BW674811
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209699676|gb|BW655742.1|BW655742
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|193350614|gb|FK317534.1|FK317534
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|13251819|gb|BG362722.1|BG362722
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7042244|gb|AW472138.1|AW472138
EST:     GAAACTGAAGAAGTATGCTACTGTGGTTCGTGTGTTTG-CTCACACTCAT                         ATCAAGAAAATGA
genomic: GAAACTGAAGAAGTATGCTACTGTGGTTCGTGT-TTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGA
EST: gi|209717595|gb|BW671491.1|BW671491
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|120532147|gb|EH260280.1|EH260280
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|193629995|gb|FK578537.1|FK578537
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7685799|gb|AW756447.1|AW756447
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|193593727|gb|FK545367.1|FK545367
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209729583|gb|BW655159.1|BW655159
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|151398239|gb|EV268117.1|EV268117
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|8827243|gb|BE210973.1|BE210973
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCATGAAAATGAAACGGTTGAAGCAGAAGAAGGCCCCTGTCATGGAA
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAA
EST: gi|209711914|gb|BW678993.1|BW678993
EST:     AGAAACTGAAGAAGTATGTTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|213601307|gb|DB956559.1|DB956559
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209705363|gb|BW668007.1|BW668007
EST:     GAAACTGAAGAAGTATGCTACTGGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGA
genomic: GAAACTGAAGAAGTATGCTACTG-TGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGA
EST: gi|7924415|gb|AW830441.1|AW830441
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTTGCTCACACTCAG                         ATCACGAAAATGAAATGGTTGAAGCAGAAGATAGCGCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7042701|gb|AW472595.1|AW472595
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|4396023|gb|AI495020.1|AI495020
EST:     TGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: TGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|15814258|gb|BI786533.1|BI786533
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209706622|gb|BW676143.1|BW676143
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|6747549|gb|AW318005.1|AW318005
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|298166741|gb|HO010180.1|HO010180
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|213616738|gb|DB971249.1|DB971249
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAAT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAAT
EST: gi|209716133|gb|BW668659.1|BW668659
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCC-ATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|58016492|gb|CX703234.1|CX703234
EST:     AAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGCCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|7147554|gb|AW509476.1|AW509476
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTGTTGACTCACACTCAC                         ATCACGAAAATGACAAGG-TTGAAGCAGAAGAAAGCCCATATCATGGAAAT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGA-AAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAT
EST: gi|22522850|gb|BU081661.1|BU081661
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|33390387|gb|CA853582.1|CA853582
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|58022760|gb|CX709501.1|CX709501
EST:     TGAAGAAGTATGCTACTGTGGTTCGTGTTTGGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGAAAATT
genomic: TGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|6913249|gb|AW394779.1|AW394779
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAAAT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGG-AAAT
EST: gi|209699780|gb|BW655793.1|BW655793
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|298179744|gb|HO024959.1|HO024959
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|209718048|gb|BW671881.1|BW671881
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATT
EST: gi|213596684|gb|DB956048.1|DB956048
EST:     AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAG                         ATCAGGAAAATGAAAGGGTT
genomic: AGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGgtactaaccc ... aatcttacagATCAGGAAAATGAAAGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattatcatgattgagatttattcctaatagtctgtctgccttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT
                       tcctaat  putative branch site (score: 2)
                 atttattcctaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatgttcttttaattccaaattaagagtcacttccaattatcacaaattatcatgattgagatttattcctaatagtctgtctgccttgaatcttacagATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - ccaaatt
- - - - - - - - - - - - - - -cacttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcctt