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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC

Basic information

species Glycine max
transcript GLYMA10G36600.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g08700.1 (Oryza sativa), 3'ss of exon 5
gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgt-tttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
                                            ||  | | |   || | ||  |  | || |      | ||| |  ||    || |  | |||  |   ||  || ||| || ||||| ||||||||||| |||||||| ||||||||||||| ||| ||| | ||| | || || ||||| |||||    |||||||    | ||  
------------------------------------------gtaatttga-tccagtgatcaatacatgttccacaaacaattgaagaaagagtttgacatatttttctcatatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGATTCTGTCACGCATCATAGATGGGACACTCAGTTATGATAGAAATGGTTT

upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G844173_T01 (Zea mays), 3'ss of exon 4
gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
                                  | ||  |  |  | ||   ||  || | | ||   | ||| |       | | | || ||  || |  || ||| ||||     ||| || ||||| ||||||||||| |||||||| ||||||||||| | ||||||| |||||   || || ||||| |||||   |||||||| |  | ||||
---------------------------------gtaatacaaacttcttatggataattgctagga---aattcaagaaagaatctgacaagtttcttttacttgcac-tgta----cagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGTACATCCAATTCTTTCACCCATCATAGATGGGACACTGTGCTATGATAGGCATGGTCC

upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 5
gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
                                ||  |   ||||   ||  | |   ||  || ||   |  || |       | ||| |  |  ||| |  || ||  ||||     ||| || ||||| ||||||||||| |||||||| ||||||||||  | ||||||| ||||| | || || ||||| || ||   ||||||||    | ||||
-------------------------------gtaatacaaactccttatggaca--attgtcagga---aactcaagaaagaatctaacatatcatttttaattgcat-tgta----cagCAACTTTTGTTCTTCATCATCCGGAGCATGGTCATGCAGTTGCACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCC

upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
                                   |  ||| |||||||   |||| |   ||    |  |||    | |   |||  || ||  |||  ||||||  ||| ||    |||||  ||||||||||||||||| |||||||| ||||||||  | |||||||| ||||||||| ||||||||||  |  | || ||    ||||    || 
-----------------------------------gtatga-tcaacat--ttatgatccacacttctctttttgtgtgtgaatgtc-tatctgattttcgttttctgatgaaa---cagCGATGTTTGTCCTTCATCATCCGGAGCATGGTCATGCAGTCATTCTTCCAATCATTTCATGTCTTATTGATGGCTCGTTGGTGTACAGCAAGGAAGCTCA

upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtatttatgctctatcccatgtcagtttaacttatgattgactcaacataaatatggttaccatgatttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
||||| ||| | |   | ||||   | || || |  |||||   ||  ||    |   ||  |||| ||  ||||||    |   || | ||||| ||||  ||  | ||  |  |  ||| || ||||| ||||||||||| || ||||||||||| || || |||||||||||||| ||||| |||||||||||||| || ||||||| |  || |||
gtattcatgtttt--tcaatgttgatatacctaaaaattgatataagttattattccctaatatgaatt--ttctatcaactgcatagtgacttccttataatta-aaatcaattttcagCAACGTTTGTTCTTCATCATCCGGAACATGGGCATGCTGTCGTTCTTCCAATTATTTCGTGTATCATTGATGGTACACTGGTGTATGATAGGTGTACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatttctattttatttgtaataacttctttatgttttcacatgtaaatctagCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCC
                    taataac  putative branch site (score: 1)
     tttctattttatttgt  TA-rich tract